Journal Papers

Breaking the exascale barrier for the electronic structure problem in ab-initio molecular dynamics
R. Schade, T. Kenter, H. Elgabarty, M. Lass, T. Kühne, C. Plessl, The International Journal of High Performance Computing Applications (2023).
Multi-FPGA Designs and Scaling of HPC Challenge Benchmarks via MPI and Circuit-Switched Inter-FPGA Networks
M. Meyer, T. Kenter, C. Plessl, ACM Transactions on Reconfigurable Technology and Systems (2023).
SIMULATeQCD: A simple multi-GPU lattice code for QCD calculations
L. Mazur, D. Bollweg, D.A. Clarke, L. Altenkort, O. Kaczmarek, R. Larsen, H.-T. Shu, J. Goswami, P. Scior, H. Sandmeyer, M. Neumann, H. Dick, S. Ali, J. Kim, C. Schmidt, P. Petreczky, S. Mukherjee, Computer Physics Communications (2023).
Viscosity of pure-glue QCD from the lattice
L. Altenkort, A.M. Eller, A. Francis, O. Kaczmarek, L. Mazur, G.D. Moore, H.-T. Shu, Physical Review D 108 (2023).
Lattice QCD noise reduction for bosonic correlators through blocking
L. Altenkort, A.M. Eller, O. Kaczmarek, L. Mazur, G.D. Moore, H.-T. Shu, Physical Review D 105 (2022).
Linearly shifting ferromagnetic resonance response of La0.7Sr0.3MnO3 thin film for body temperature sensors
W. Hou, Y. Yao, Y. Li, B. Peng, K. Shi, Z. Zhou, J. Pan, M. Liu, J. Hu, Frontiers of Materials Science 16 (2022).
Nonlinear down-conversion in a single quantum dot
B. Jonas, D.F. Heinze, E. Schöll, P. Kallert, T. Langer, S. Krehs, A. Widhalm, K. Jöns, D. Reuter, S. Schumacher, A. Zrenner, Nature Communications 13 (2022).
Parallel quantum chemistry on noisy intermediate-scale quantum computers
R. Schade, C. Bauer, K. Tamoev, L. Mazur, C. Plessl, T. Kühne, Phys. Rev. Research 4 (2022) 033160.
Plant mitochondrial RNA editing factors can perform targeted C-to-U editing of nuclear transcripts in human cells
E. Lesch, M.T. Schilling, S. Brenner, Y. Yang, O.J. Gruss, V. Knoop, M. Schallenberg-Rüdinger, Nucleic Acids Research 50 (2022) 9966–9983.
Stable bipolarons in open quantum systems
M. Moroder, M. Grundner, F. Damanet, U. Schollwöck, S. Mardazad, S. Flannigan, T. Köhler, S. Paeckel, Physical Review B 107, 214310 (2023) (2022).
Statistical analysis of initial state and final state response in heavy-ion collisions
N. Borghini, M. Borrell, N. Feld, H. Roch, S. Schlichting, C. Werthmann, Phys. Rev. C 107 (2023) 034905 (2022).
Towards electronic structure-based ab-initio molecular dynamics simulations with hundreds of millions of atoms
R. Schade, T. Kenter, H. Elgabarty, M. Lass, O. Schütt, A. Lazzaro, H. Pabst, S. Mohr, J. Hutter, T. Kühne, C. Plessl, Parallel Computing 111 (2022).
Diffusion of the carbon dioxide–ethanol mixture in the extended critical region
R.S. Chatwell, G. Guevara-Carrion, Y. Gaponenko, V. Shevtsova, J. Vrabec, Physical Chemistry Chemical Physics 23 (2021) 3106–3115.
Heavy quark momentum diffusion from the lattice using gradient flow
L. Altenkort, A.M. Eller, O. Kaczmarek, L. Mazur, G.D. Moore, H.-T. Shu, Physical Review D 103 (2021).
How irreversible are steady-state trajectories of a trapped active particle?
L. Dabelow, S. Bo, R. Eichhorn, Journal of Statistical Mechanics: Theory and Experiment 2021 (2021).
Sphaleron rate from Euclidean lattice correlators: An exploration
L. Altenkort, A.M. Eller, O. Kaczmarek, L. Mazur, G.D. Moore, H.-T. Shu, Physical Review D 103 (2021).
The HighPerMeshes framework for numerical algorithms on unstructured grids
S. Alhaddad, J. Förstner, S. Groth, D. Grünewald, Y. Grynko, F. Hannig, T. Kenter, F. Pfreundt, C. Plessl, M. Schotte, T. Steinke, J. Teich, M. Weiser, F. Wende, Concurrency and Computation: Practice and Experience (2021) e6616.
The Strong Scaling Advantage of FPGAs in HPC for N-body Simulations
J. Menzel, C. Plessl, T. Kenter, ACM Transactions on Reconfigurable Technology and Systems 15 (2021) 1–30.
<i>In silico</i> investigation of Cu(In,Ga)Se<sub>2</sub>-based solar cells
H. Mirhosseini, R. Kormath Madam Raghupathy, S.K. Sahoo, H. Wiebeler, M. Chugh, T.D. Kühne, Physical Chemistry Chemical Physics 22 (2020) 26682–26701.
Accurate Sampling with Noisy Forces from Approximate Computing
V. Rengaraj, M. Lass, C. Plessl, T. Kühne, Computation 8 (2020).
CP2K: An electronic structure and molecular dynamics software package - Quickstep: Efficient and accurate electronic structure calculations
T. Kühne, M. Iannuzzi, M.D. Ben, V.V. Rybkin, P. Seewald, F. Stein, T. Laino, R.Z. Khaliullin, O. Schütt, F. Schiffmann, D. Golze, J. Wilhelm, S. Chulkov, M.H.B.-H. Mohammad Hossein Bani-Hashemian, V. Weber, U. Borstnik, M. Taillefumier, A.S. Jakobovits, A. Lazzaro, H. Pabst, T. Müller, R. Schade, M. Guidon, S. Andermatt, N. Holmberg, G.K. Schenter, A. Hehn, A. Bussy, F. Belleflamme, G. Tabacchi, A. Glöß, M. Lass, I. Bethune, C.J. Mundy, C. Plessl, M. Watkins, J. VandeVondele, M. Krack, J. Hutter, The Journal of Chemical Physics 152 (2020).
A General Algorithm to Calculate the Inverse Principal p-th Root of Symmetric Positive Definite Matrices
D. Richters, M. Lass, A. Walther, C. Plessl, T. Kühne, Communications in Computational Physics 25 (2019) 564–585.
FPGAs im Rechenzentrum
M. Platzner, C. Plessl, Informatik Spektrum (2019).
Transparent Acceleration for Heterogeneous Platforms with Compilation to OpenCL
H. Riebler, G.F. Vaz, T. Kenter, C. Plessl, ACM Trans. Archit. Code Optim. (TACO) 16 (2019) 14:1–14:26.
Sprint diagnostic with GPS and inertial sensor fusion
J.C. Mertens, A. Boschmann, M. Schmidt, C. Plessl, Sports Engineering 21 (2018) 441–451.
Theory of optically controlled anisotropic polariton transport in semiconductor double microcavities
S.M.H. Luk, P. Lewandowski, N.H. Kwong, E. Baudin, O. Lafont, J. Tignon, P.T. Leung, Ch.K.P. Chan, M. Babilon, S. Schumacher, R. Binder, Journal of the Optical Society of America B 35 (2018).
Using Approximate Computing for the Calculation of Inverse Matrix p-th Roots
M. Lass, T. Kühne, C. Plessl, Embedded Systems Letters 10 (2018) 33–36.
Efficient Branch and Bound on FPGAs Using Work Stealing and Instance-Specific Designs
H. Riebler, M. Lass, R. Mittendorf, T. Löcke, C. Plessl, ACM Transactions on Reconfigurable Technology and Systems (TRETS) 10 (2017) 24:1-24:23.
High-Throughput and Low-Latency Network Communication with NetIO
J. Schumacher, C. Plessl, W. Vandelli, Journal of Physics: Conference Series 898 (2017).
Potential and Methods for Embedding Dynamic Offloading Decisions into Application Code
G.F. Vaz, H. Riebler, T. Kenter, C. Plessl, Computers and Electrical Engineering 55 (2016) 91–111.
Aktuelles Schlagwort: Approximate Computing
C. Plessl, M. Platzner, P.J. Schreier, Informatik Spektrum (2015) 396–399.
Exploring Tradeoffs between Specialized Kernels and a Reusable Overlay in a Stereo-Matching Case Study
T. Kenter, H. Schmitz, C. Plessl, International Journal of Reconfigurable Computing (IJRC) 2015 (2015).
FELIX: a High-Throughput Network Approach for Interfacing to Front End Electronics for ATLAS Upgrades
J. Anderson, A. Borga, H. Boterenbrood, H. Chen, K. Chen, G. Drake, D. Francis, B. Gorini, F. Lanni, G. Lehmann Miotto, L. Levinson, J. Narevicius, C. Plessl, A. Roich, S. Ryu, F. Schreuder, J. Schumacher, W. Vandelli, J. Vermeulen, J. Zhang, Journal of Physics: Conference Series 664 (2015).
Self-Aware and Self-Expressive Systems – Guest Editor's Introduction
J. Torresen, C. Plessl, X. Yao, IEEE Computer 48 (2015) 18–20.
Simulative Ultraschall-Untersuchung von Pitch-Catch-Messanordnungen für große zylindrische Stahl-Prüflinge und gradientenbasierte Bildgebung
S. Hegler, C. Statz, M. Mütze, H. Mooshofer, M. Goldammer, K. Fendt, S. Schwarzer, K. Feldhoff, M. Flehmig, U. Markwardt, W. E. Nagel, M. Schütte, A. Walther, M. Meinel, A. Basermann, D. Plettemeier, Tm - Technisches Messen 82 (2015) 440–450.
Accelerating Finite Difference Time Domain Simulations with Reconfigurable Dataflow Computers
H. Giefers, C. Plessl, J. Förstner, ACM SIGARCH Computer Architecture News 41 (2014) 65–70.
ReconOS - An Operating System Approach for Reconfigurable Computing
A. Agne, M. Happe, A. Keller, E. Lübbers, B. Plattner, M. Platzner, C. Plessl, IEEE Micro 34 (2014) 60–71.
Self-awareness as a Model for Designing and Operating Heterogeneous Multicores
A. Agne, M. Happe, A. Lösch, C. Plessl, M. Platzner, ACM Transactions on Reconfigurable Technology and Systems (TRETS) 7 (2014).
Seven Recipes for Setting Your FPGA on Fire – A Cookbook on Heat Generators
A. Agne, H. Hangmann, M. Happe, M. Platzner, C. Plessl, Microprocessors and Microsystems 38 (2014) 911–919.
Novel Field-Programmable Gate Array Architecture for Computing the Eigenvalue Decomposition of Para-Hermitian Polynomial Matrices
S. Kasap, S. Redif, IEEE Trans. on Very Large Scale Integration (VLSI) Systems 22 (2013) 522–536.
A Single Sign-On Infrastructure for Science Gateways on a Use Case for Structural Bioinformatics
S. Gesing, R. Grunzke, J. Krüger, G. Birkenheuer, M. Wewior, P. Schäfer, B. Schuller, J. Schuster, S. Herres-Pawlis, S. Breuers, Á. Balaskó, M. Kozlovszky, A. Szikszay Fabri, L. Packschies, P. Kacsuk, D. Blunk, T. Steinke, A. Brinkmann, G. Fels, R. Müller-Pfefferkorn, R. Jäkel, O. Kohlbacher, Journal of Grid Computing 10 (2012) 769–790.
Cost-aware and SLO Fulfilling Software as a Service
O. Niehörster, J. Simon, A. Brinkmann, A. Keller, J. Krüger, Journal of Grid Computing 10 (2012) 553–577.
IMORC: An Infrastructure and Architecture Template for Implementing High-Performance Reconfigurable FPGA Accelerators
T. Schumacher, C. Plessl, M. Platzner, Microprocessors and Microsystems 36 (2012) 110–126.
Parallel algorithm for computation of second-order sequential best rotations
S. Redif, S. Kasap, Int. Journal of Electronics 100 (2012) 1646–1651.
STIR: Software for Tomographic Image Reconstruction Release 2
K. Thielemans, C. Tsoumpas, S. Mustafovic, T. Beisel, P. Aguiar, N. Dikaios, M. W Jacobson, Physics in Medicine and Biology 57 (2012) 867–883.
Workflow-enhanced conformational analysis of guanidine zinc complexes via a science gateway
S. Herres-Pawlis, G. Birkenheuer, A. Brinkmann, S. Gesing, R. Grunzke, R. Jäkel, O. Kohlbacher, J. Krüger, I. Dos Santos Vieira, Studies in Health Technology and Informatics 175 (2012) 142–151.
FPGA Acceleration of Communication-bound Streaming Applications: Architecture Modeling and a 3D Image Compositing Case Study
T. Schumacher, T. Süß, C. Plessl, M. Platzner, Int. Journal of Recon- Figurable Computing (IJRC) (2011).
Infrastructure Federation Through Virtualized Delegation of Resources and Services
G. Birkenheuer, A. Brinkmann, M. Högqvist, A. Papaspyrou, B. Schott, D. Sommerfeld, W. Ziegler, Journal of Grid Computing 9 (2011) 355–377.
Virtualized HPC: a contradiction in terms?
G. Birkenheuer, A. Brinkmann, J. Kaiser, A. Keller, M. Keller, C. Kleineweber, C. Konersmann, O. Niehörster, T. Schäfer, J. Simon, M. Wilhelm, Software: Practice and Experience (2011).
Risikomanagement für verteilte Umgebungen
A. Brinkmann, D. Battré, G. Birkenheuer, O. Kao, K. Voß, ForschungsForum Paderborn 13 (2010).
A Microdriver Architecture for Error Correcting Codes inside the Linux Kernel
A. Brinkmann, D. Eschweiler, Journal of Supercomputing (2009) 35:1-35:10.
Reformulating XPath queries and XSLT queries on XSLT views
S. Groppe, S. Böttcher, G. Birkenheuer, A. Höing, Data & Knowledge Engineering 57 (2006) 64–110.
Anatomy of a Resource Management System for HPC Clusters
A. Keller, A. Reinefeld, Annual Review of Scalable Computing 3 (2001) 1–31.
Managing Clusters of Geographically Distributed High-Performance Computers
M. Brune, J. Gehring, A. Keller, A. Reinefeld, Concurrency, Practice, and Experience II(15) (1999) 887–911.
Specifying Resources and Services in Metacomputing Environments
M. Brune, J. Gehring, A. Keller, B. Monien, Parallel Computing 24 (1998) 1751–1776.
The Latency-of-Data-Access model for Analyzing Parallel Computation
J. Simon, J.-M. Wierum, Information Processing Letters - Special Issue on Models of Computation 66 (1998) 255–261.
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